{{{ #!/bin/sh # # this is an example of an automatic labeling script for the left hemisphere, # for the PPG that we have drawn on the study average cortical surface called "myAverage" ## variables ## Freesurfer directory thePath='/imaging/yourusername/yourproject/subjects' subjects=( 'CBUXXXXXX' \ 'CBUYYYYYY' \ ) ## Processing: nsubjects=${#subjects[*]} lastsubj=`expr $nsubjects - 1` for m in `seq 0 ${lastsubj}` do echo "=======================================================" echo " " echo " Computing hPPG cortex surface label left hemisphere" echo " " echo "=======================================================" mri_label2label \ --srcsubject myAverage \ --srclabel ${thePath}/myAverage/label/lh.hPPG.label \ --trgsubject ${subjects[m]} \ --trglabel ${thePath}/${subjects[m]}/label/lh.hPPG.label \ --hemi lh \ --regmethod surface done # subjects lh }}}