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⇤ ← Revision 1 as of 2009-08-04 09:38:46
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| * This page outlines a basic pipeline for some types of FreeSurfer analysis (however, it is specifically designed not to work by default. You should educate yourself and make decisions based on your specific experiment). There are far too many features in FreeSurfer to cover all of them in our wiki, so do not think this page covers all of the details: DansStructuralPage. * This page explains how to create structural data for source analysis: [http://imaging.mrc-cbu.cam.ac.uk/imaging/DanStructurals] |
* This page outlines a basic pipeline for some types of FreeSurfer analysis (however, it is specifically designed not to work by default. You should educate yourself and make decisions based on your specific experiment). There are far too many features in FreeSurfer to cover all of them in our wiki, so do not think this page covers all of the details: DanStructurals. |
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| * See chapter 13 of the manual | Can be found toward the bottom of this page: http://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWiki |
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| MNE has been developed at the Martinos Center (in Boston, US), primarily by Matti Hämäläinen. Here is its home: http://www.nmr.mgh.harvard.edu/martinos/userInfo/data/sofMNE.php | FreeSurfer has been developed at the Martinos Center (in Boston, US). Here is its home: http://www.nmr.mgh.harvard.edu/martinos/userInfo/data/sofFreeSurf.php |
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| At the moment, we are using "MNE 2.6.0". At the CBU, MNE is installed here: | At the moment, we are using "FreeSurfer 4.3.0". At the CBU, FreeSurfer is installed here: |
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| {{{/imaging/local/linux/mne_2.6.0}}} | {{{/imaging/local/linux/freesurfer_4.3.0}}} |
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| To source the MNE tools type "mne_setup_2.6.0". Some of the tools will only be available on vncserver.glx sessions (or at a linux workstation). | To source the MNE tools type "freesurfer_4.3.0". Some of the tools will only be available on vncserver.glx sessions (or at a linux workstation). |
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| The previous version "MNE 2.5.0" is available. | A previous version "FreeSurfer 4.0.1" is available. |
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| To source this version type "mne_2.5.0". | To source this version type "freesurfer_4.0.1". |
Analysis of MRI Data in FreeSurfer
Demos
For the tutorial, see the FreeSurfer wiki ([http://surfer.nmr.mgh.harvard.edu/fswiki]).
Futher Help
- The most important source for help is the wiki mentioned above.
This page outlines a basic pipeline for some types of FreeSurfer analysis (however, it is specifically designed not to work by default. You should educate yourself and make decisions based on your specific experiment). There are far too many features in FreeSurfer to cover all of them in our wiki, so do not think this page covers all of the details: DanStructurals.
Some relevant papers
Can be found toward the bottom of this page: http://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWiki
The code
FreeSurfer has been developed at the Martinos Center (in Boston, US). Here is its home: http://www.nmr.mgh.harvard.edu/martinos/userInfo/data/sofFreeSurf.php
At the moment, we are using "FreeSurfer 4.3.0". At the CBU, FreeSurfer is installed here:
/imaging/local/linux/freesurfer_4.3.0
To source the MNE tools type "freesurfer_4.3.0". Some of the tools will only be available on vncserver.glx sessions (or at a linux workstation).
A previous version "FreeSurfer 4.0.1" is available.
To source this version type "freesurfer_4.0.1".