Diff for "FmDownload" - MRC CBU Imaging Wiki
location: Diff for "FmDownload"
Differences between revisions 1 and 2
Revision 1 as of 2006-07-04 15:00:14
Size: 1727
Editor: Scripting Subsystem
Comment:
Revision 2 as of 2006-07-27 14:34:58
Size: 2076
Editor: devel01
Comment:
Deletions are marked like this. Additions are marked like this.
Line 1: Line 1:
||<tablewidth="648px">
||<100% bgcolor="#FFFF99">'''Using a field-map to undistort EPIs'''
[wiki:FmBackground Background]
[wiki:FmPower Improvement in power!]
[wiki:FmFieldmaps Acquiring fieldmaps]
[wiki:FmDownload Download]
[wiki:FmRequirements What you'll need to undistort an EPI data series]
[wiki:FmReference Guide and reference]
[wiki:FmExampl
e Step-by-step example]
[wiki:FmBatch Batch mode]
||
||
||<100% bgcolor="#FFFF99">'''Using a field-map to undistort EPIs'''[[BR]][wiki:FmBackground Background][[BR]][wiki:FmPower Improvement in power!][[BR]][wiki:FmFieldmaps Acquiring fieldmaps][[BR]][wiki:FmDownload Download][[BR]][wiki:FmRequirements What you'll need to undistort an EPI data series][[BR]][wiki:FmReference Guide and reference][[BR]][wiki:MyPage Step-by-step example][[BR]][wiki:FmBatch Batch mode]||
Line 14: Line 4:
== What software you'll need == === What software you'll need ===
Line 29: Line 19:
If you are an academic user you may download this software for free immediately: please first download a license form. [http://imaging.mrc-cbu.cam.ac.uk/pdfs/undistortion_licence.pdf Download this one] if you are downloading the compiled version, or [http://imaging.mrc-cbu.cam.ac.uk/pdfs/undistortion_source_licence.pdf this one] if you are downloading the source code. Before you download the software, please sign and return two copies of the appropriate form. If you are an academic user you may download this software for free immediately: please first download a license form. [http://imaging.mrc-cbu.cam.ac.uk/text/undistortion_licence.doc Download this one] if you are downloading the compiled version, or [http://imaging.mrc-cbu.cam.ac.uk/text/undistortion_source_licence.doc this one] if you are downloading the source code. Before you download the software, please sign and return two copies of the appropriate form.
Line 31: Line 21:
If you are a commercial user please email [mailto:rhodri.cusack@mrc.cbu.cam.ac.uk rhodri.cusack@mrc-cbu.cam.ac.uk] If you are a commercial user please email rhodri.cusack@mrc.cbu.cam.ac.uk
Line 33: Line 23:
''This software is not to be used for medical diagnosis. The author or the MRC take no responsibility for the results of its use.'' === Download version 3.03 ===
[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_siemenes_exampledataset.tar Siemens example dataset (2MB)]
Line 35: Line 26:
=== Your details ===
We would be very grateful if you would provide the following information. Your details will be kept secure and not passed on to any third party.
[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_exampledataset.tar Bruker Example dataset (111MB)]
Line 38: Line 28:
[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_v3p03_solaris.tar Sun (solaris) (4MB)]

[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_v3p03_linux.tar Linux (Red Hat) (4MB)]

[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_v3p03_windows.tar Windows (4MB)]

[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_v3p03_withsrc.tar Source code (all platforms, requires Perl, and either GCC or MS Visual Studio or CXX) (17MB)]

Using a field-map to undistort EPIsBR[wiki:FmBackground Background]BR[wiki:FmPower Improvement in power!]BR[wiki:FmFieldmaps Acquiring fieldmaps]BR[wiki:FmDownload Download]BR[wiki:FmRequirements What you'll need to undistort an EPI data series]BR[wiki:FmReference Guide and reference]BR[wiki:MyPage Step-by-step example]BR[wiki:FmBatch Batch mode]

Download

What software you'll need

Matlab

SPM 99 or above

If you are using Bruker format input files, a Perl interpreter (e.g, from cygwin.com)

If you wish to compile the code, you'll need Perl and gcc or cxx, or a love of the joy of programming.

What data you'll need

Field maps (see 'Acquiring fieldmaps' above)

Echo planar functional data in Analyze format

Licensing

If you are an academic user you may download this software for free immediately: please first download a license form. [http://imaging.mrc-cbu.cam.ac.uk/text/undistortion_licence.doc Download this one] if you are downloading the compiled version, or [http://imaging.mrc-cbu.cam.ac.uk/text/undistortion_source_licence.doc this one] if you are downloading the source code. Before you download the software, please sign and return two copies of the appropriate form.

If you are a commercial user please email rhodri.cusack@mrc.cbu.cam.ac.uk

Download version 3.03

[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_siemenes_exampledataset.tar Siemens example dataset (2MB)]

[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_exampledataset.tar Bruker Example dataset (111MB)]

[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_v3p03_solaris.tar Sun (solaris) (4MB)]

[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_v3p03_linux.tar Linux (Red Hat) (4MB)]

[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_v3p03_windows.tar Windows (4MB)]

[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_v3p03_withsrc.tar Source code (all platforms, requires Perl, and either GCC or MS Visual Studio or CXX) (17MB)]

CbuImaging: FmDownload (last edited 2013-03-07 21:22:58 by localhost)