= AFNI installation notes =

 * http://afni.nimh.nih.gov/afni/doc/howto/0
 * http://afni.nimh.nih.gov/pub/dist/HOWTO//howto/ht00_inst/html/index.shtml
 * http://afni.nimh.nih.gov/pub/dist/HOWTO//howto/ht00_inst/html/linux_comp.shtml
 * http://lcni.uoregon.edu/mediawiki/index.php/GENTOO:Install_AFNI

For the imaging servers

{{{
release=0841
cd /imaging/matthew/installs
wget http://afni.nimh.nih.gov/pub/dist/tgz/afni_src.tgz
tar zxvf afni_src.tgz
release_dir=afni_src_$release
mv afni_src $release_dir
cd $release_dir
make -f Makefile.linux_gcc32 totality suma
cp linux_gcc32/* /imaging/local/linux/afni/bin
}}}

== Optional installs (docs, data) ==

This lifted from http://lcni.uoregon.edu/mediawiki/index.php/GENTOO:Install_AFNI with thanks.

=== Install docs ===
{{{
wget http://afni.nimh.nih.gov/pub/dist/tgz/afni_doc.tgz
tar xfz afni_doc.tgz
mv afni_doc /imaging/local/linux/afni/doc
}}}

=== Install sample data ===

{{{
wget http://afni.nimh.nih.gov/pub/dist/edu/data/AFNI_data1.tgz
wget http://afni.nimh.nih.gov/pub/dist/edu/data/AFNI_data2.tgz
wget http://afni.nimh.nih.gov/pub/dist/edu/data/SUMA_demo.tgz
wget http://afni.nimh.nih.gov/pub/dist/edu/data/SUMA_StandardMeshes.tgz
wget http://afni.nimh.nih.gov/sscc/staff/ziad/SUMA/SUMA_demo-FS.tgz

mv AFNI_data?.tgz SUMA_*.tgz /imaging/local/linux/afni/data
cd /imaging/local/linux/afni/data
tar xfz AFNI_data1.tgz
tar xfz AFNI_data2.tgz
tar xfz SUMA_demo.tgz
tar xfz SUMA_StandardMeshes.tgz

mkdir suma_demo
cd suma_demo
tar xvfz ../SUMA_demo-FS.tgz
cd ..

rm -f AFNI_data?.tgz SUMA_*.tgz
}}}           

=== AFNI's Talairach dataset ===

{{{
wget http://afni.nimh.nih.gov/pub/dist/tgz/TTatlas+tlrc.HEAD
wget http://afni.nimh.nih.gov/pub/dist/tgz/TTatlas+tlrc.BRIK.gz
mv TTatlas+tlrc.* /imaging/local/linux/afni/bin
}}}